PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 655aa    MW: 71885 Da    PI: 6.3087
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58694532PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-50950PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09530578348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r       +Rt+ ++k++w+++l
        Lsa008930 530 PWTLSEVVKLVEGVSRYGAGRWSEIKRIAFstcSHRTPVDLKDKWRNLL 578
                      8**************************99999*9*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.471523582IPR017930Myb domain
SuperFamilySSF466891.94E-16525584IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-13525581IPR009057Homeodomain-like
SMARTSM007179.7E-10527580IPR001005SANT/Myb domain
CDDcd116604.52E-19529579No hitNo description
PfamPF002494.5E-7530578IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
METLVAIEGS EKSKLEGTSA IVITCSDSSK QIADPVVYKL ARVEGDGRLV PATDDEVMEV  60
EDLLDDKSSV HFVLDTCQPA VCASNHETFG QEFMPMSIDS QGLFKVKDPC TLGGGSDTVF  120
GTTVDLGKLN SQFEEIGRSV SIPVDGKIEE SGDRKGSVES EPSTSTMCVN GKPDFSKLKG  180
EICLDNLSVR ELHATFKATF GRETSVKDKQ WLKRRISMGL SNSCDVSTTT FIIENNIITK  240
KPKVEEDCKD NSNLNIEKEK EKEDAFVISV GQSQSVDNHN HNHNHNHMED DKLGGSSKSV  300
KSGTTAIPKH HHMGIGSEDD KDGGKRVRKP TKRYIEVSES ESRDSGSGRL VSSVKSSGHG  360
PRTRVRPLHN IQPVTSATTR PLVTRQDSLG GSGVEIPYVS RIRRGRPREN FMALMKFQSC  420
GTGIAAKLVK TAHAVDEVEN RELKNALPTG WVQLQQPVIK EGGGGSEQYS EEASGELKND  480
SEEGQMDSYD DVEAEAEAEE EEDSDDNDNG NNILTVPTAK GGMRRKHHRP WTLSEVVKLV  540
EGVSRYGAGR WSEIKRIAFS TCSHRTPVDL KDKWRNLLRA SFAQLPAEKG VQNSKKQSSI  600
PIPAPILLRV RELAEMQSQV SPDLKQPLRF GGGHNHNSNS GSRNVNDIKS GFLXW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654465.11e-174PREDICTED: uncharacterized protein LOC100263481 isoform X6
TrEMBLA0A118JV090.0A0A118JV09_CYNCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.27e-89TRF-like 6